Secondary Structure and Topology of Interleukin-1 Receptor Antagonist Protein Determined by Heteronuclear Three-Dimensional NMR Spectroscopy

Abstract

Interleukin-1 (IL-1) proteins, such as IL-lπ, play a key role in immune and inflammatory responses. Interaction of these cytokines with the IL-1 receptor induces a variety of biological changes in neurologic, metabolic, hematologic, and endocrinologic systems. Interleukin-1 receptor antagonist protein (IRAP) is a naturally occurring inhibitor of the interleukin-1 receptor. The 153-residue protein binds to the receptor with an affinity similar to that of IL-1π but does not elicit any physiological responses. As a first step toward understanding IRAP's mode of action, we have used multidimensional, heteronuclear NMR spectroscopy to determine the antagonist's solution secondary structure and global fold. Using a combination of 3D 1H-15N NOESY-HMQC and TOCSY-HMQC and 3D 1H-15N-13C HNCA and HN(CO)CA experiments on uniformly 15N-or doubly 13C/15N-enriched IRAP, we have made resonance assignments for more than 90% of the main-chain atoms. Analysis of short-and long-range NOE's indicates that IRAP is predominantly π-sheet, with the same overall topology as IL-π but with different regions of the primary sequence comprising the 0-strands. Two short helical segments also were identified. The 14% sequence identity between IL-1π and IRAP increases to 25% when differences in the locations of secondary structure elements in the primary sequences are taken into account. Still, numerous differences in side chains, which ultimately play a major role in receptor interaction, exist. Comparison of the structure of IRAP with that of IL-π provides a basis for understanding the structure/function relationships at the molecular level that account for the drastically different physiological effects of these two proteins. © 1992, American Chemical Society. All rights reserved.