Neutral and adaptive genetic variation in Indian snow leopards, Panthera uncia

Abstract

In this study, we reveal patterns of genetic variation in snow leopards (Panthera uncia) by combining neutral (mtDNA, microsatellites) and adaptive (MHC II-DRB) genes. We collected 56 faecal samples from three loca-tions in India. We observed moderate levels of microsat-ellite diversity (N = 32; A = 5.6; HO = 0.559). Nine unique MHC II-DRB sequences were identified in four snow leopard samples, of which 8 were novel. We found low levels of polymorphism in MHC class II-DRB exon, which was higher in captive (VA = 9.4%) compared to wild individuals (VA = 7.8%), likely as a result of a population bottleneck.