ADMorph: A 3D Digital Microfossil Morphology Dataset for Deep Learning

Abstract

Microfossils, tiny fossils whose study requires the use of a microscope, have been widely applied in many fields of earth, life, and environmental sciences. The abundance and high diversity of microfossils, as well as the need for rapid identification, call for automated methods to classify microfossils. In this study, we constructed an open dataset of three-dimensional (3D) microfossils and proposed a deep learning-based approach for microfossil classification. The dataset, named 'Archives of Digital Morphology' (ADMorph), currently contains more than ten thousand 3D models from five classes of 410 million-year-old fishes. The deep learning-based method includes data preprocessing, feature extraction, and 3D microfossil model classification. To assess the method performance and dataset representability, we performed extensive experiments. Compared with multiview convolutional neural networks (MVCNN) (91.54%), PointNet (64.13%), and VoxNet (78.15%), the method proposed herein had higher accuracy (97.60%) on the experimental dataset. We also verified data preprocessing (92.36%) and feature extraction (97.10%). We combined them to obtain the macroaveraging accuracy of 97.60%, the highest accuracy of 100%, and the lowest accuracy of 88.78%. We suggest that the proposed method can be applied to other 3D fossils and biomorphological research fields. The fast-accumulating 3D fossil models might become a source of information-rich datasets for deep learning.