APDB: A web server to evaluate the accuracy of sequence alignments using structural information

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Abstract

Summary: The APDB webserver uses structural information to evaluate the alignment of sequences with known structures. It returns a score correlated to the overall alignment accuracy as well as a local evaluation. Any sequence alignment can be analyzed with APDB provided it includes at least two proteins with known structures. Sequences without a known structure are simply ignored and do not contribute to the scoring procedure. © 2006 Oxford University Press.

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Armougom, F., Poirot, O., Moretti, S., Higgins, D. G., Bucher, P., Keduas, V., & Notredame, C. (2006). APDB: A web server to evaluate the accuracy of sequence alignments using structural information. Bioinformatics, 22(19), 2439–2440. https://doi.org/10.1093/bioinformatics/btl404

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