Polymorphisms of mitochondrial Cyt b gene and D-loop region in sweetfish (Plecoglossus altivelis Temminck et Schlegel) from Zhejiang and Fujian Provinces

Abstract

We reported here the molecular analysis of mitochondrial genomes in sweetfish (Plecoglossus altivelis). Thirty-one specimens were recruited from Ruian, Zhejiang Province, Ningde, Fujian Province, and Dongzhang reservoir, Fujian Province. DNA segments spanning cytochrome b gene and D-loop region derived from these specimens were PCR-amplified and subsequently characterized by direct DNA sequence analysis. The resultant sequence data were compared with the consensus sequence and further analyzed for proportion of each nucleotide. The average A, T, C, and G con-tents in Cyt b gene were 19.72%, 29.71%, 32.25%, and 18.32%, respectively, while the contents of A+T and G+C were 49.43% and 50.57%. In the D-loop region, the average A, T, C and G contents were 29.99%, 29.29%, 23.80%, and 16.92% and the contents of A+T and G+C were 59.28% and 40.72%, respectively. There was only one variant in the Cyt b gene belong to two haplotypes and the nucleotide diversity (pi) was merely 0.00028. In the D-loop region, there were only 5 polymorphic sites belonging to 5 haplotypes and its nucleotide diversity (pi) was only 0.00199. These results showed that the genetic diversity of P. altivelis from these regions was very low.